PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_B24F28600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 284aa    MW: 30977.9 Da    PI: 8.8441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_B24F28600.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY651.2e-20135196259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 
                            +Dg++WrKYG K++ ++ fprsYYrC ++   +Cp+kk v+++++ dp v+ +t  ++H+++
  Traes_1AL_B24F28600.1 135 NDGFHWRKYGEKKILNAVFPRSYYRCGYSdehRCPAKKLVQQQNNiDPPVFMVTLINDHTCS 196
                            7**************************998889*******987655**************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-20130196IPR003657WRKY domain
SuperFamilySSF1182907.32E-20130196IPR003657WRKY domain
SMARTSM007745.7E-29134197IPR003657WRKY domain
PROSITE profilePS5081114.848135193IPR003657WRKY domain
PfamPF031068.0E-22135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAMRPKSDMS PPPSDQRGAV IEELRKGAQL ADRLRQQLEL IPELGRRSAA LASVSNISTA  60
LVSSASMLES NREQYGCSSP DPGAAAYAAG ASGNGGGIGA RNGAIARTRK AKHRRGPHGE  120
ELPIKGRILT ETPENDGFHW RKYGEKKILN AVFPRSYYRC GYSDEHRCPA KKLVQQQNNI  180
DPPVFMVTLI NDHTCSSLFP ANDQPPSSSN SATVNSQVLD FTKASLSSAV GLSRLKKEED  240
AGMSVTVPSY TYEELASYSS LPLLSPKEWE MEMEIKSLFR HHSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233189.21e-110PREDICTED: WRKY transcription factor 55-like
TrEMBLW4ZS310.0W4ZS31_WHEAT; Uncharacterized protein
STRINGMLOC_57051.11e-150(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-18WRKY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]